PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031223m
Common NameCICLE_v10031223mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 528aa    MW: 58337.3 Da    PI: 8.7132
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031223mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012377399123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC  C+k+F ++ +L  H  +H
  Ciclev10031223m 377 FKCLTCNKVFHSPRSLWGHTASH 399
                      89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.11E-9933No hitNo description
PROSITE profilePS501579.4111138IPR007087Zinc finger, C2H2
SMARTSM003550.311133IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-61134IPR007087Zinc finger, C2H2
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SuperFamilySSF576672.11E-994121No hitNo description
PROSITE profilePS5015710.09799126IPR007087Zinc finger, C2H2
SMARTSM003550.1399121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
PfamPF139124.8E-8101123IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182377404IPR007087Zinc finger, C2H2
SuperFamilySSF576677.57E-7377399No hitNo description
SMARTSM003550.043377399IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-4377401IPR007087Zinc finger, C2H2
PROSITE patternPS000280379399IPR007087Zinc finger, C2H2
SuperFamilySSF576677.57E-7456483No hitNo description
PROSITE profilePS501578.871461483IPR007087Zinc finger, C2H2
SMARTSM003550.19461483IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-8461483IPR007087Zinc finger, C2H2
PROSITE patternPS000280463483IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MEAANQKKKL FVCKYCNKRY PCGKSLGGHI RTHMNNGKSA EAEGEGEVKL NIDKIFSGRN  60
IKKDSCFEAG GQSGYVLREN PKRTRRFVDS NTLTSQQEMV CKECGKVFQS LKALCGHMAC  120
HSEKDNKMKT SFQDHLEGSD LKQKLVMDSE SDTETSAPSR RRRSKGTGYM TMGAYSSSVD  180
VANGSSSVSE LEQEQEEVAI CLMMLSRDSS GCKKGLNSFA DSSDNNSVVL EAKSSSIDMK  240
ISGANCVPNG NEFVEMNKSN DSKFKSAEID DVSDNSDSGY FRNGPKKAES NASFDGFIRT  300
GKCKKSGVEY GPGFEEFDAK FEKSSNKRTE FGKHLTKEED FALVDRASTK HGSRKRAKND  360
SSSPQIFRNN AQKRSQFKCL TCNKVFHSPR SLWGHTASHS KINGCCESIN ESSENSRETD  420
SFPVPMPNSK FCKSVNGKTP IAQNLSTNVD KRLGSKKSKG HECPFCFRVF KSGQALGGHK  480
RSHFVGGSED KTVVIKQELD EMHGLIDLNL PAPVENEVIR DAEFSRW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438809.10.0hypothetical protein CICLE_v10031223mg
TrEMBLV4VHH00.0V4VHH0_9R
STRINGVIT_01s0011g00710.t011e-161(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-63C2H2-like zinc finger protein